Yacoby's Morrowind
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ReOrder Mods

Info
I really like the "Reorder Plugins" Utility, but it had a few failings:

You could not select more than one item to move up and down, this lead to a lot of clicking
There was no "Move to Bottom" button, which I would have found very useful

Those to facts taken into account, it made reordering 100+ mods a pain
This Utility fixes the above two issues, and adds more features

Features
Move mods up and down
Move mods to the top or bottom of the load list
Use the search box to search for the mod you want to move
Remove all the “clean”s from the front of mod file names
Import and Export Load order
It supports more than one installation of each game
Auto backup feature

For more info on each of these, see the readme

UI Screenshot

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